TOOLS
A collection of small tools I’m building for fun and practice.
Perform global alignment between two input sequences to compare them across their full lengths
Generate a dot plot to compare your sequences
Enter a DNA or RNA sequence and a motif, use N in the motif as any base
Enter a DNA or RNA sequence, support IUPAC Code
Enter a DNA or RNA sequence and choose an option, support IUPAC Code
Enter a DNA or RNA sequence you want to translation to a protein
Please noticed Stop will be shown as "*"
Use SQL filters to explore TNBC ATAC-seq peak accessibility This tool was built as part of my practice to improve SQL skills, using real data generated from my ATAC-seq TNBC project Check out the Projects page for more details on the analysis
Mini BLAST DNA alignment tool built for practice using k-mer seeding,
ungapped alignment, and a simple +1/-1 scoring system. The reference database
contains several commonly
cancer-related genes
Because computation is performed directly in the browser,
sequences longer than 250 bp are not recommended
Enter a sequence and k-mer sizes to run the kmer Finder
Enter a sequence and repeat length to run the Repeat Finder
Enter a sequence to run the ORF Finder
Enter two sequences to perform sequence alignment
Enter two sequences to perform sequence alignment
Enter two sequences and a window size to generate a dot plot